Fujifilm X-Pro2 has a 24.0MP APS-C (23.6 x 15.6 mm ) sized CMOS X-TRANS III sensor and features EXR Processor III processor. On the other hand, Fujifilm X-Pro3 has a 26.0MP APS-C (23.5 x 15.6 mm ) sized BSI-CMOS sensor and features X-Processor 4 processor.
Another similarity between these two cameras is that both Fujifilm X-Pro3 and Fujifilm X-Pro2 sensors lack anti-alias (Low-Pass) filters. Removing anti-alias filter increases the sharpness and level of detail but at the same time, it increases the chance of moiré occurring in certain scenes.
Below you can see the X-Pro2 and X-Pro3 sensor size comparison.
Sensor Size and Resolution Comparison image of Fujifilm X-Pro2 and Fujifilm X-Pro3 Cameras
Fujifilm X-Pro2 and Fujifilm X-Pro3 have almost the same sensor size, so neither of them has any significant advantage over the other in terms of providing control over depth of field when used with the same focal length and aperture.