Nikon L31 has a 16.0MP 1/2.3' (6.17 x 4.55 mm ) sized CMOS sensor . On the other hand, Canon S90 has a 10.0MP 1/1.7-inch (7.44 x 5.58 mm ) sized CCD sensor and features Digic 4 processor.
Nikon L31's sensor provides 6MP more than Canon S90's sensor, which gives a significant advantage in real life. You can print your images larger or crop more freely.
On the other hand, please keep in mind that Max sensor resolution is not the only determinant of resolving power. Factors such as the optical elements, low pass filter, pixel size and sensor technology also affects the final resolution of the captured image.
Below you can see the L31 and S90 sensor size comparison.
As seen above, Canon S90 has a 1.5x Larger sensor area than Nikon L31. Larger sensors give photographer more control on the depth of field and blurry background compared to smaller sensor when shot in same focal length and aperture.