Both Fujifilm X-T1 and Fujifilm X-T1 IR have APS-C sized 16.0 MP resolution sensors so sensor size and resolution is not a differentiator between these two cameras.
Another difference between these two cameras is that Fujifilm X-T1 IR's sensor lacks anti-alias (Low-Pass) filter. Removing anti-alias filter increases the sharpness and level of detail but at the same time, it increases the chance of moire occurring in certain scenes.
Below you can see the X-T1 and X-T1 IR sensor size comparison.
Fujifilm X-T1 and Fujifilm X-T1 IR sensors have exactly the same size so none of them has any advantage over other in this area.